Search results for "Graph isomorphism problem"
showing 2 items of 2 documents
Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
2001
We describe algorithms for pattern-matching and pattern-learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgraph isomorphism and finding maximal common subgraphs in a restricted class of ordered graphs. We have developed a subgraph isomorphism algorithm for ordered graphs, which performs well on the given set of data. The maximal common subgraph problem then is solved by repeated subgraph extension and checking for isomorphisms. Despite its apparent inefficiency, this approach yields an algorithm with time complexity proportional to the number of graphs in the input set and is still practical on the given set of data. As a…
A Polynomial Quantum Query Lower Bound for the Set Equality Problem
2004
The set equality problem is to tell whether two sets A and B are equal or disjoint under the promise that one of these is the case. This problem is related to the Graph Isomorphism problem. It was an open problem to find any ω(1) query lower bound when sets A and B are given by quantum oracles. We will show that any error-bounded quantum query algorithm that solves the set equality problem must evaluate oracles \(\Omega(\sqrt[5]{\frac{n}{\ln n}})\) times, where n=|A|=|B|.